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without replicate
•
reset
1
vote
6
replies
2.7k
views
Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
limma
edger
timecourse
without replicate
voom
written 7.5 years ago by
Camila Orellana
▴ 10
0
votes
1
reply
618
views
BSmooth does give DMRs without no replicate data sets
bsmooth
without replicate
dimension
5.8 years ago
nilaycan
• 0
0
votes
3
replies
1.0k
views
time-series, no replicates, no control groupe
deseq2
time-series
without replicate
updated 5.8 years ago by
Michael Love
42k • written 5.8 years ago by
bahlv
• 0
1
vote
5
replies
3.0k
views
steps to get up and down regulated genes using DESeq2
deseq2
without replicate
no replicates
updated 6.0 years ago by
Michael Love
42k • written 6.0 years ago by
Tony
• 0
3
votes
6
replies
4.4k
views
Analyzing data without replicates using DiffBind
diffbind
bioconductor
differential binding analysis
without replicate
chipseq
6.5 years ago
Hesh
▴ 10
4
votes
5
replies
2.5k
views
edgeR- DE analysis with no replicates
edger
differential gene expression
without replicate
nested design
help
updated 7.9 years ago by
Aaron Lun
★ 28k • written 7.9 years ago by
knipehf
• 0
3
votes
6
replies
1.3k
views
Question about edgeR usage with one case and multiple controls
edgeR
differential expression
without replicate
7.9 years ago
gavin.oliver
• 0
0
votes
3
replies
1.4k
views
to call differential peaks among 4 peaksets all together using DiffBind
diffbind
without replicate
updated 8.1 years ago by
Gord Brown
▴ 650 • written 8.1 years ago by
yiweihe
• 0
2
votes
7
replies
2.8k
views
edgeR for with no Replicate
edger
without replicate
updated 8.4 years ago by
Yunshun Chen
▴ 840 • written 8.4 years ago by
Sushant Pawar
• 0
1
vote
1
reply
1.5k
views
edgeR for without Replicate
edger
without replicate
updated 8.4 years ago by
Aaron Lun
★ 28k • written 8.4 years ago by
Sushant Pawar
• 0
0
votes
10
replies
4.6k
views
DESeq2 analysis without Replicate
without Replicate
deseq2
updated 2.8 years ago by
Michael Love
42k • written 8.4 years ago by
Sushant Pawar
• 0
11 results • Page
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Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
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by
Juan Higareda
• 0
Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…
Answer: meffil.snp.concordance
by
James W. MacDonald
65k
This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
Answer: minfi latest update for EPIC V2 chip
by
James W. MacDonald
65k
Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…
Votes
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
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